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Aicda activation induced cytidine deaminase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100689250, updated on 8-Mar-2024

Summary

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Gene symbol
Aicda
Gene description
activation induced cytidine deaminase
See related
Ensembl:ENSCGRG00015013726
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614669.1 (516662..519417)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 8 NC_048601.1 (22725862..22728654, complement)

NW_003614669.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene microfibril associated protein 5 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial-like Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Somatic hypermutation of the AID transgene in B and non-B cells. Martin A, et al. Proc Natl Acad Sci U S A, 2002 Sep 17. PMID 12202747, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxycytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA cytosine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614669.1 Reference CriGri_1.0 Primary Assembly

    Range
    516662..519417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035460322.1 → XP_035316213.1  single-stranded DNA cytosine deaminase

    UniProtKB/TrEMBL
    A0A8C2LPC9, A0A9J7H4L3
    Conserved Domains (1) summary
    pfam18772
    Location:7 → 171
    APOBEC2

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048601.1 Alternate CriGri-PICRH-1.0

    Range
    22725862..22728654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035449019.1 → XP_035304910.1  single-stranded DNA cytosine deaminase

    UniProtKB/TrEMBL
    A0A8C2LPC9, A0A9J7H4L3
    Related
    ENSCGRP00015017986.1, ENSCGRT00015022094.2
    Conserved Domains (1) summary
    pfam18772
    Location:7 → 171
    APOBEC2
Nucleotide Protein Strain
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