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Smpd4 sphingomyelin phosphodiesterase 4 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100753418, updated on 8-Mar-2024

Summary

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Gene symbol
Smpd4
Gene description
sphingomyelin phosphodiesterase 4
See related
Ensembl:ENSCGRG00015007638
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613919.1 (1529181..1555650)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (71690530..71716828, complement)

NW_003613919.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X 6 Neighboring gene solute carrier family 7 member 4 Neighboring gene coiled-coil domain containing 74B Neighboring gene mediator complex subunit 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4
Names
sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613919.1 Reference CriGri_1.0 Primary Assembly

    Range
    1529181..1555650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007643472.3 → XP_007641662.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A061IAT9, A0A8C2QLT4
    Conserved Domains (1) summary
    pfam14724
    Location:49 → 809
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_007643474.3 → XP_007641664.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A061I8N1, A0A9J7FWB5
    Conserved Domains (1) summary
    pfam14724
    Location:49 → 780
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  3. XM_007643473.3 → XP_007641663.1  sphingomyelin phosphodiesterase 4 isoform X2

    UniProtKB/TrEMBL
    A0A061IAT9, A0A9J7FUT6
    Conserved Domains (1) summary
    pfam14724
    Location:23 → 782
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    71690530..71716828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027413165.2 → XP_027268966.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A061IAT9, A0A8C2QLT4
    Related
    ENSCGRP00015010806.1, ENSCGRT00015013249.2

  2. XM_027413166.2 → XP_027268967.1  sphingomyelin phosphodiesterase 4 isoform X2

    UniProtKB/TrEMBL
    A0A061IAT9, A0A9J7FUT6
    Related
    ENSCGRP00015010845.2, ENSCGRT00015013297.2

  3. XM_027413168.2 → XP_027268969.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A061I8N1, A0A9J7FWB5
    Related
    ENSCGRP00015010875.1, ENSCGRT00015013331.2
Nucleotide Protein Strain
Heading Accession and Version

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