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Slc6a4 solute carrier family 6 member 4 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100754706, updated on 8-Mar-2024

Summary

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Gene symbol
Slc6a4
Gene description
solute carrier family 6 member 4
Locus tag
I79_013361
See related
Ensembl:ENSCGRG00015017436
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614210.1 (464450..485683)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (90418585..90439850)

NW_003614210.1Genomic Context describing neighboring genes Neighboring gene transmembrane and immunoglobulin domain containing 1 Neighboring gene bleomycin hydrolase Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene microRNA mir-423 Neighboring gene EF-hand calcium binding domain 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in serotonin uptake IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent serotonin transporter
Names
Sodium-dependent serotonin transporter
solute carrier family 6 (neurotransmitter transporter), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614210.1 Reference CriGri_1.0 Primary Assembly

    Range
    464450..485683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035458109.1 → XP_035314000.1  sodium-dependent serotonin transporter

    UniProtKB/TrEMBL
    A0A8C2MNF1, G3HR97
    Conserved Domains (2) summary
    cd11513
    Location:79 → 615
    SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
    pfam03491
    Location:24 → 64
    5HT_transport_N; Serotonin (5-HT) neurotransmitter transporter, N-terminus

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    90418585..90439850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035448185.1 → XP_035304076.1  sodium-dependent serotonin transporter

    UniProtKB/TrEMBL
    A0A8C2MNF1, G3HR97
    Related
    ENSCGRP00015022970.1, ENSCGRT00015028175.2
    Conserved Domains (2) summary
    cd11513
    Location:79 → 615
    SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
    pfam03491
    Location:24 → 64
    5HT_transport_N; Serotonin (5-HT) neurotransmitter transporter, N-terminus
Nucleotide Protein Strain
Heading Accession and Version

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