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Fdps farnesyl diphosphate synthase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100754883, updated on 8-Mar-2024

Summary

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Gene symbol
Fdps
Gene description
farnesyl diphosphate synthase
Locus tag
I79_007989
See related
Ensembl:ENSCGRG00015001852
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613854.1 (274823..284252, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (65442852..65452402)

NW_003613854.1Genomic Context describing neighboring genes Neighboring gene death associated protein 3 Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene U6 spliceosomal RNA Neighboring gene RUN and SH3 domain containing 1 Neighboring gene 40S ribosomal protein S9-like Neighboring gene pyruvate kinase L/R

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase
Names
Farnesyl pyrophosphate synthetase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613854.1 Reference CriGri_1.0 Primary Assembly

    Range
    274823..284252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016975166.3 → XP_016830655.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    G3HC39

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    65442852..65452402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027393197.2 → XP_027248998.1  farnesyl pyrophosphate synthase isoform X4

    UniProtKB/TrEMBL
    A0A8C2QPU8, G3HC39
    Related
    ENSCGRP00015002295.1, ENSCGRT00015002851.2

  2. XM_035450506.1 → XP_035306397.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    A0A9J7KDT3, G3HC39
    Conserved Domains (1) summary
    pfam00348
    Location:112 → 312
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_027393199.2 → XP_027249000.1  farnesyl pyrophosphate synthase isoform X5

    UniProtKB/TrEMBL
    A0A9J7F6A5

  4. XM_027393198.2 → XP_027248999.1  farnesyl pyrophosphate synthase isoform X4

    UniProtKB/TrEMBL
    A0A8C2QPU8, G3HC39

  5. XM_035450505.1 → XP_035306396.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A9J7HAE3, G3HC39
    Related
    ENSCGRP00015052639.1, ENSCGRT00015074209.1
    Conserved Domains (1) summary
    pfam00348
    Location:112 → 375
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein Strain
Heading Accession and Version

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