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Synj1 synaptojanin 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100757174, updated on 8-Mar-2024

Summary

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Gene symbol
Synj1
Gene description
synaptojanin 1
Locus tag
I79_000815
See related
Ensembl:ENSCGRG00015013383
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
30
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613595.1 (3581711..3656286, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (6749672..6824482)

NW_003613595.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1
Names
Synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613595.1 Reference CriGri_1.0 Primary Assembly

    Range
    3581711..3656286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035455416.1 → XP_035311307.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2LUM9
    Conserved Domains (4) summary
    PHA03378
    Location:944 → 1251
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:486 → 799
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:798 → 939
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_007642008.2 → XP_007640198.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2LUM9, A0A8C2LZK4
    Conserved Domains (3) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60 → 340
    Syja_N; SacI homology domain
    cl17169
    Location:862 → 1003
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_035455406.1 → XP_035311297.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2LUM9
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:1008 → 1315
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1003
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_035455411.1 → XP_035311302.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8C2LUM9
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:1008 → 1315
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1003
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_035455402.1 → XP_035311293.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LUM9
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:1008 → 1315
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1003
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_035455418.1 → XP_035311309.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8C2LUM9
    Conserved Domains (4) summary
    cd09098
    Location:455 → 790
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:935 → 1242
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:4 → 410
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:789 → 930
    RRM_SF; RNA recognition motif (RRM) superfamily

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    6749672..6824482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035444322.1 → XP_035300213.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LUM9, A0A9J7K8N6
    Related
    ENSCGRP00015017497.1, ENSCGRT00015021492.2
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1049 → 1314
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1003
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_035444323.1 → XP_035300214.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8C2LUM9, A0A9J7GZS0
    Conserved Domains (4) summary
    cd09098
    Location:455 → 790
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:976 → 1241
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:4 → 410
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:789 → 930
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein Strain
Heading Accession and Version

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