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Tmlhe trimethyllysine hydroxylase, epsilon [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100757720, updated on 8-Mar-2024

Summary

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Gene symbol
Tmlhe
Gene description
trimethyllysine hydroxylase, epsilon
Locus tag
I79_014859
See related
Ensembl:ENSCGRG00015008931
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614341.1 (234383..289868)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) X NC_048604.1 (209582..301894)

NW_003614341.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene sprouty RTK signaling antagonist 3 Neighboring gene U1 spliceosomal RNA Neighboring gene RAB39B, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables trimethyllysine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trimethyllysine dioxygenase, mitochondrial
Names
Trimethyllysine dioxygenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614341.1 Reference CriGri_1.0 Primary Assembly

    Range
    234383..289868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035458983.1 → XP_035314874.1  trimethyllysine dioxygenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    G3HV82
    Conserved Domains (1) summary
    cl00184
    Location:70 → 419
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...

  2. XM_035458984.1 → XP_035314875.1  trimethyllysine dioxygenase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    G3HV82
    Conserved Domains (1) summary
    cl00184
    Location:70 → 340
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048604.1 Alternate CriGri-PICRH-1.0

    Range
    209582..301894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027432516.2 → XP_027288317.1  trimethyllysine dioxygenase, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8C2M2M3, G3HV82
    Related
    ENSCGRP00015011629.1, ENSCGRT00015014250.2

  2. XM_035450138.1 → XP_035306029.1  trimethyllysine dioxygenase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A9J7H6Q4, G3HV82
    Conserved Domains (1) summary
    cl00184
    Location:70 → 340
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...

  3. XM_027432519.2 → XP_027288320.1  trimethyllysine dioxygenase, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A9J7GKN6, G3HV82
Nucleotide Protein Strain
Heading Accession and Version

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