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Bbox1 gamma-butyrobetaine hydroxylase 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100759730, updated on 8-Mar-2024

Summary

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Gene symbol
Bbox1
Gene description
gamma-butyrobetaine hydroxylase 1
See related
Ensembl:ENSCGRG00015008135
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614250.1 (29011..92937, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (67737803..67791994)

NW_003614250.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118239086 Neighboring gene fin bud initiation factor homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables gamma-butyrobetaine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-butyrobetaine dioxygenase
Names
butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1
butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614250.1 Reference CriGri_1.0 Primary Assembly

    Range
    29011..92937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003506507.5 → XP_003506555.1  gamma-butyrobetaine dioxygenase

    See identical proteins and their annotated locations for XP_003506555.1

    UniProtKB/TrEMBL
    A0A8C2LR37
    Conserved Domains (3) summary
    cd00250
    Location:108 → 370
    CAS_like; Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases ...
    TIGR02409
    Location:16 → 381
    carnitine_bodg; gamma-butyrobetaine hydroxylase
    pfam06155
    Location:15 → 82
    DUF971; Protein of unknown function (DUF971)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048599.1 Alternate CriGri-PICRH-1.0

    Range
    67737803..67791994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027422289.2 → XP_027278090.1  gamma-butyrobetaine dioxygenase

    UniProtKB/TrEMBL
    A0A8C2LR37
    Related
    ENSCGRP00015010531.1, ENSCGRT00015012930.2
Nucleotide Protein Strain
Heading Accession and Version

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