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Smpd1 sphingomyelin phosphodiesterase 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100760557, updated on 8-Mar-2024

Summary

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Gene symbol
Smpd1
Gene description
sphingomyelin phosphodiesterase 1
Locus tag
I79_025113
See related
Ensembl:ENSCGRG00015011315
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003618335.1 (3576..7666)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (94145624..94149654, complement)

NW_003618335.1Genomic Context describing neighboring genes Neighboring gene amyloid beta precursor protein binding family B member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase
Names
sphingomyelin phosphodiesterase 1, acid lysosomal

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003618335.1 Reference CriGri_1.0 Primary Assembly

    Range
    3576..7666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003515527.4 → XP_003515575.1  sphingomyelin phosphodiesterase

    See identical proteins and their annotated locations for XP_003515575.1

    UniProtKB/TrEMBL
    A0A061IEQ5, A0A8C2LZY5
    Conserved Domains (2) summary
    smart00741
    Location:85 → 158
    SapB; Saposin (B) Domains
    cd00842
    Location:199 → 494
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    94145624..94149654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027404942.2 → XP_027260743.1  sphingomyelin phosphodiesterase

    UniProtKB/TrEMBL
    A0A061IEQ5, A0A8C2LZY5
    Related
    ENSCGRP00015014685.1, ENSCGRT00015018005.2
Nucleotide Protein Strain
Heading Accession and Version

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