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Sgms2 sphingomyelin synthase 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100760913, updated on 8-Mar-2024

Summary

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Gene symbol
Sgms2
Gene description
sphingomyelin synthase 2
See related
Ensembl:ENSCGRG00015005909
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614745.1 (485035..507644, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (27531271..27611373)

NW_003614745.1Genomic Context describing neighboring genes Neighboring gene hydroxyacyl-CoA dehydrogenase Neighboring gene cytochrome P450 2U1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2
Names
Phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614745.1 Reference CriGri_1.0 Primary Assembly

    Range
    485035..507644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003509642.5 → XP_003509690.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_003509690.1

    UniProtKB/TrEMBL
    A0A061IQB3, G3I338
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_035460595.1 → XP_035316486.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A9J7H887
    Conserved Domains (1) summary
    cl00474
    Location:220 → 242
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    27531271..27611373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027395722.2 → XP_027251523.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A061IQB3, G3I338

  2. XM_027395723.2 → XP_027251524.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A061IQB3, G3I338

  3. XM_027395724.2 → XP_027251525.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A061IQB3, G3I338
    Related
    ENSCGRP00015007556.1, ENSCGRT00015009301.2

  4. XM_027395721.2 → XP_027251522.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A061IQB3, G3I338

  5. XM_035450955.1 → XP_035306846.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A9J7H887
    Conserved Domains (1) summary
    cl00474
    Location:220 → 242
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...
Nucleotide Protein Strain
Heading Accession and Version

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