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Abca1 ATP binding cassette subfamily A member 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100761226, updated on 8-Mar-2024

Summary

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Gene symbol
Abca1
Gene description
ATP binding cassette subfamily A member 1
See related
Ensembl:ENSCGRG00015027742
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
50
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613603.1 (2482051..2610531, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (90620776..90749657)

NW_003613603.1Genomic Context describing neighboring genes Neighboring gene protein NipSnap homolog 3A Neighboring gene protein NipSnap homolog 3B Neighboring gene uncharacterized LOC118238315 Neighboring gene uncharacterized LOC113834379

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipid-transporting ATPase ABCA1
Names
ATP-binding cassette sub-family A member 1
ATP-binding cassette, sub-family A (ABC1), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613603.1 Reference CriGri_1.0 Primary Assembly

    Range
    2482051..2610531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003495857.5 → XP_003495905.1  phospholipid-transporting ATPase ABCA1

    See identical proteins and their annotated locations for XP_003495905.1

    UniProtKB/TrEMBL
    A0A8C2MHQ7, G3GTZ6
    Conserved Domains (4) summary
    cd06174
    Location:632 → 788
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR01257
    Location:6 → 2236
    rim_protein; retinal-specific rim ABC transporter
    cd03263
    Location:899 → 1119
    ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
    pfam13732
    Location:2126 → 2218
    DUF4162; Domain of unknown function (DUF4162)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    90620776..90749657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027403085.2 → XP_027258886.1  phospholipid-transporting ATPase ABCA1

    UniProtKB/TrEMBL
    A0A8C2MHQ7, G3GTZ6
    Related
    ENSCGRP00015043534.1, ENSCGRT00015051878.1
Nucleotide Protein Strain
Heading Accession and Version

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