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Crat carnitine O-acetyltransferase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100762198, updated on 8-Mar-2024

Summary

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Gene symbol
Crat
Gene description
carnitine O-acetyltransferase
See related
Ensembl:ENSCGRG00015016296
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003617466.1 (39347..53926, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (142072571..142086900, complement)

NW_003617466.1Genomic Context describing neighboring genes Neighboring gene mitoguardin 2 Neighboring gene dolichyldiphosphatase 1 Neighboring gene protein phosphatase 2 phosphatase activator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process, CoA-linked IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-acetyltransferase
Names
carnitine acetyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003617466.1 Reference CriGri_1.0 Primary Assembly

    Range
    39347..53926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003515173.4 → XP_003515221.1  carnitine O-acetyltransferase isoform X1

    See identical proteins and their annotated locations for XP_003515221.1

    UniProtKB/TrEMBL
    G3IL47
    Conserved Domains (1) summary
    pfam00755
    Location:35 → 615
    Carn_acyltransf; Choline/Carnitine o-acyltransferase

  2. XM_035438205.1 → XP_035294096.1  carnitine O-acetyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A9J7K8T9
    Conserved Domains (1) summary
    pfam00755
    Location:15 → 595
    Carn_acyltransf; Choline/Carnitine o-acyltransferase

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048599.1 Alternate CriGri-PICRH-1.0

    Range
    142072571..142086900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027423187.1 → XP_027278988.1  carnitine O-acetyltransferase isoform X1

    UniProtKB/TrEMBL
    G3IL47
    Related
    ENSCGRP00015021431.1, ENSCGRT00015026332.2

  2. XM_035446297.1 → XP_035302188.1  carnitine O-acetyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A9J7K8T9
    Conserved Domains (1) summary
    pfam00755
    Location:15 → 595
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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