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Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100762939, updated on 8-Mar-2024

Summary

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Gene symbol
Plod2
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
Locus tag
I79_015057
See related
Ensembl:ENSCGRG00015006649
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614375.1 (282883..352225, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (201524088..201593954)

NW_003614375.1Genomic Context describing neighboring genes Neighboring gene phospholipid scramblase 4 Neighboring gene phospholipid scramblase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614375.1 Reference CriGri_1.0 Primary Assembly

    Range
    282883..352225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035459128.1 → XP_035315019.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X2

    UniProtKB/TrEMBL
    A0A061I6X6, A0A8C2MXC8
    Conserved Domains (1) summary
    smart00702
    Location:577 → 740
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_016978101.3 → XP_016833590.2  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1

    UniProtKB/TrEMBL
    A0A061I6X6, A0A8C2N5H0
    Conserved Domains (1) summary
    smart00702
    Location:598 → 761
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    201524088..201593954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027410945.2 → XP_027266746.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X4

    UniProtKB/TrEMBL
    A0A061I6X6, A0A8C2MXC8
    Related
    ENSCGRP00015008714.2, ENSCGRT00015010710.2
    Conserved Domains (1) summary
    smart00702
    Location:577 → 740
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_027410944.2 → XP_027266745.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X3

    UniProtKB/TrEMBL
    A0A061I6X6, A0A8C2N5H0
    Related
    ENSCGRP00015008745.1, ENSCGRT00015010749.2
    Conserved Domains (1) summary
    smart00702
    Location:598 → 761
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein Strain
Heading Accession and Version

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