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LOC100766093 proton-coupled amino acid transporter 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100766093, updated on 19-Dec-2023

Summary

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Gene symbol
LOC100766093
Gene description
proton-coupled amino acid transporter 1
Locus tag
I79_005456
See related
Ensembl:ENSCGRG00015034820
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613733.1 (1229228..1253195)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (69399840..69434787)

NW_003613733.1Genomic Context describing neighboring genes Neighboring gene proton-coupled amino acid transporter 3 Neighboring gene proton-coupled amino acid transporter 2 Neighboring gene FAT atypical cadherin 2 Neighboring gene U6 spliceosomal RNA Neighboring gene secreted protein acidic and cysteine rich

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-alanine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-proline transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amino acid:proton symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-alanine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proline transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuolar membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proton-coupled amino acid transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613733.1 Reference CriGri_1.0 Primary Assembly

    Range
    1229228..1253195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016974151.3 → XP_016829640.3  proton-coupled amino acid transporter 1 isoform X1

    Conserved Domains (1) summary
    cl00456
    Location:46 → 403
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    69399840..69434787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027427456.2 → XP_027283257.1  proton-coupled amino acid transporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2LND4
    Related
    ENSCGRP00015055336.1, ENSCGRT00015047812.1

  2. XM_035447643.1 → XP_035303534.1  proton-coupled amino acid transporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A9J7H5K9
    Conserved Domains (1) summary
    cl00456
    Location:3 → 359
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_035447645.1 → XP_035303536.1  proton-coupled amino acid transporter 1 isoform X4

    UniProtKB/TrEMBL
    A0A9J7H4T8
    Conserved Domains (1) summary
    cl00456
    Location:30 → 345
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_035447644.1 → XP_035303535.1  proton-coupled amino acid transporter 1 isoform X4

    UniProtKB/TrEMBL
    A0A9J7H4T8
    Conserved Domains (1) summary
    cl00456
    Location:30 → 345
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein Strain
Heading Accession and Version

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