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Smpd2 sphingomyelin phosphodiesterase 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100771550, updated on 8-Mar-2024

Summary

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Gene symbol
Smpd2
Gene description
sphingomyelin phosphodiesterase 2
Locus tag
I79_002508
See related
Ensembl:ENSCGRG00015000285
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613639.1 (2515153..2518099)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (263898762..263901708, complement)

NW_003613639.1Genomic Context describing neighboring genes Neighboring gene CD164 molecule Neighboring gene uncharacterized LOC103160549 Neighboring gene peptidylprolyl isomerase like 6 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene zinc finger and BTB domain containing 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 2
Names
sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)
sphingomyelin phosphodiesterase 2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613639.1 Reference CriGri_1.0 Primary Assembly

    Range
    2515153..2518099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003496988.5 → XP_003497036.2  sphingomyelin phosphodiesterase 2

    See identical proteins and their annotated locations for XP_003497036.2

    UniProtKB/TrEMBL
    A0A8C2MR96
    Conserved Domains (1) summary
    cl00490
    Location:14 → 279
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    263898762..263901708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027402207.2 → XP_027258008.1  sphingomyelin phosphodiesterase 2

    UniProtKB/TrEMBL
    A0A8C2MR96
    Related
    ENSCGRP00015000267.1, ENSCGRT00015000368.2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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