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Trdmt1 tRNA aspartic acid methyltransferase 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100773025, updated on 8-Mar-2024

Summary

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Gene symbol
Trdmt1
Gene description
tRNA aspartic acid methyltransferase 1
See related
Ensembl:ENSCGRG00015022074
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613962.1 (1297479..1347273)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (218994371..219044042)

NW_003613962.1Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene U6 spliceosomal RNA Neighboring gene vimentin Neighboring gene cubilin Neighboring gene uncharacterized LOC118239906

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (cytosine(38)-C(5))-methyltransferase
Names
tRNA (cytosine-5-)-methyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613962.1 Reference CriGri_1.0 Primary Assembly

    Range
    1297479..1347273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035456489.1 → XP_035312380.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A9J7GUJ1
    Conserved Domains (1) summary
    cl30459
    Location:1 → 287
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  2. XM_035456488.1 → XP_035312379.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A9J7GUJ1
    Conserved Domains (1) summary
    cl30459
    Location:1 → 287
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  3. XM_003503380.5 → XP_003503428.3  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

    UniProtKB/TrEMBL
    G3HHR4
    Conserved Domains (1) summary
    cd00315
    Location:4 → 391
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  4. XM_035456487.1 → XP_035312378.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A9J7GWU6
    Conserved Domains (1) summary
    cl30459
    Location:4 → 358
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  5. XM_035456485.1 → XP_035312376.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9J7K7C6
    Conserved Domains (1) summary
    cl30459
    Location:4 → 358
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  6. XM_035456486.1 → XP_035312377.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A9J7GX73
    Conserved Domains (1) summary
    cl30459
    Location:4 → 330
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  7. XM_035456490.1 → XP_035312381.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X6

    UniProtKB/TrEMBL
    A0A9J7GVK6
    Conserved Domains (1) summary
    cl30459
    Location:4 → 219
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    218994371..219044042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035442816.1 → XP_035298707.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A9J7GUJ1
    Conserved Domains (1) summary
    cl30459
    Location:1 → 287
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  2. XM_035442815.1 → XP_035298706.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A9J7GUJ1
    Conserved Domains (1) summary
    cl30459
    Location:1 → 287
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  3. XM_027405243.2 → XP_027261044.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X2

    UniProtKB/TrEMBL
    G3HHR4
    Related
    ENSCGRP00015029250.1, ENSCGRT00015035792.2

  4. XM_035442814.1 → XP_035298705.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A9J7GWU6
    Conserved Domains (1) summary
    cl30459
    Location:4 → 358
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  5. XM_035442812.1 → XP_035298703.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9J7K7C6
    Related
    ENSCGRP00015048484.1, ENSCGRT00015049638.1
    Conserved Domains (1) summary
    cl30459
    Location:4 → 358
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  6. XM_035442813.1 → XP_035298704.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A9J7GX73
    Conserved Domains (1) summary
    cl30459
    Location:4 → 330
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

  7. XM_035442817.1 → XP_035298708.1  tRNA (cytosine(38)-C(5))-methyltransferase isoform X6

    UniProtKB/TrEMBL
    A0A9J7GVK6
    Conserved Domains (1) summary
    cl30459
    Location:4 → 219
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...
Nucleotide Protein Strain
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