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Slc24a1 solute carrier family 24 member 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100773154, updated on 8-Mar-2024

Summary

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Gene symbol
Slc24a1
Gene description
solute carrier family 24 member 1
Locus tag
I79_014748
See related
Ensembl:ENSCGRG00015022431
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614337.1 (130561..159012, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (176529802..176558108, complement)

NW_003614337.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118239971 Neighboring gene cytochrome c, somatic-like Neighboring gene DENN domain containing 4A Neighboring gene integrator complex subunit 14 Neighboring gene 3-hydroxyacyl-CoA dehydratase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium, potassium:sodium antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-term synaptic depression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-term synaptic potentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/potassium/calcium exchanger 1
Names
Sodium/potassium/calcium exchanger 1
solute carrier family 24 (sodium/potassium/calcium exchanger), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614337.1 Reference CriGri_1.0 Primary Assembly

    Range
    130561..159012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016977953.3 → XP_016833442.1  sodium/potassium/calcium exchanger 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C2N057

  2. XM_007647704.4 → XP_007645894.1  sodium/potassium/calcium exchanger 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N057
    Conserved Domains (3) summary
    TIGR00927
    Location:1 → 1128
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01699
    Location:965 → 1116
    Na_Ca_ex; Sodium/calcium exchanger protein
    cl22451
    Location:752 → 874
    ASF1_hist_chap; ASF1 like histone chaperone

  3. XM_016977954.3 → XP_016833443.1  sodium/potassium/calcium exchanger 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2N057

  4. XM_003507141.5 → XP_003507189.1  sodium/potassium/calcium exchanger 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2N057
    Conserved Domains (3) summary
    TIGR00927
    Location:1 → 1054
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01699
    Location:891 → 1042
    Na_Ca_ex; Sodium/calcium exchanger protein
    pfam03247
    Location:708 → 793
    Prothymosin; Prothymosin/parathymosin family

  5. XM_003507140.5 → XP_003507188.1  sodium/potassium/calcium exchanger 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N057
    Conserved Domains (3) summary
    TIGR00927
    Location:1 → 1178
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01699
    Location:1015 → 1166
    Na_Ca_ex; Sodium/calcium exchanger protein
    cl22451
    Location:644 → 791
    ASF1_hist_chap; ASF1 like histone chaperone

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    176529802..176558108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027411359.2 → XP_027267160.1  sodium/potassium/calcium exchanger 1 isoform X9

    UniProtKB/TrEMBL
    A0A8C2N057, A0A9J7JNH4

  2. XM_027411360.2 → XP_027267161.1  sodium/potassium/calcium exchanger 1 isoform X10

    UniProtKB/TrEMBL
    A0A8C2N057, A0A9J7FUV1

  3. XM_027411358.2 → XP_027267159.1  sodium/potassium/calcium exchanger 1 isoform X8

    UniProtKB/TrEMBL
    A0A8C2N057, A0A9J7FW89
    Related
    ENSCGRP00015029740.1, ENSCGRT00015036370.2

  4. XM_027411357.2 → XP_027267158.1  sodium/potassium/calcium exchanger 1 isoform X7

    UniProtKB/TrEMBL
    A0A8C2N057, A0A9J7FRU3

  5. XM_027411356.2 → XP_027267157.1  sodium/potassium/calcium exchanger 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C2N057, A0A9J7FU87
Nucleotide Protein Strain
Heading Accession and Version

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