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Pde1c phosphodiesterase 1C [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100774969, updated on 8-Mar-2024

Summary

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Gene symbol
Pde1c
Gene description
phosphodiesterase 1C
Locus tag
I79_010858
See related
Ensembl:ENSCGRG00015023818
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
22
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614013.1 (97588..230623)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 8 NC_048601.1 (84951657..85209702)

NW_003614013.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene ITPR interacting domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Names
Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
phosphodiesterase 1C, calmodulin-dependent 70kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614013.1 Reference CriGri_1.0 Primary Assembly

    Range
    97588..230623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003503929.5 → XP_003503977.2  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

    See identical proteins and their annotated locations for XP_003503977.2

    UniProtKB/TrEMBL
    A0A8C2LY76, A0A9J7H608
    Conserved Domains (3) summary
    PTZ00121
    Location:502 → 588
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:186 → 414
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:45 → 101
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  2. XM_007644452.4 → XP_007642642.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X2

    See identical proteins and their annotated locations for XP_007642642.1

    UniProtKB/TrEMBL
    G3HJL0
    Conserved Domains (2) summary
    pfam00233
    Location:186 → 414
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:45 → 101
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  3. XM_007644453.4 → XP_007642643.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

    See identical proteins and their annotated locations for XP_007642643.1

    UniProtKB/TrEMBL
    G3HJL0
    Conserved Domains (2) summary
    pfam00233
    Location:186 → 414
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:45 → 101
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  4. XM_035456824.1 → XP_035312715.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    A0A8C2LY76, A0A9J7KC99
    Conserved Domains (3) summary
    PTZ00121
    Location:430 → 516
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:114 → 342
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:1 → 29
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  5. XM_035456825.1 → XP_035312716.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    A0A8C2LY76, A0A9J7KC99
    Conserved Domains (3) summary
    PTZ00121
    Location:430 → 516
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:114 → 342
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:1 → 29
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

RNA

  1. XR_482565.4 RNA Sequence

  2. XR_004773681.1 RNA Sequence

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048601.1 Alternate CriGri-PICRH-1.0

    Range
    84951657..85209702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035448641.1 → XP_035304532.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X5

    UniProtKB/TrEMBL
    A0A8C2LXA8, A0A8C2LXN9
    Related
    ENSCGRP00015041016.1, ENSCGRT00015078556.1
    Conserved Domains (2) summary
    pfam00233
    Location:227 → 455
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  2. XM_035448642.1 → XP_035304533.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X6

    UniProtKB/TrEMBL
    A0A8C2LXN9, A0A9J7H5A7
    Related
    ENSCGRP00015031676.2, ENSCGRT00015038690.2
    Conserved Domains (2) summary
    pfam00233
    Location:227 → 455
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  3. XM_035448643.1 → XP_035304534.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X7

    UniProtKB/TrEMBL
    A0A8C2LXB8, A0A8C2LXN9
    Related
    ENSCGRP00015031712.1, ENSCGRT00015038729.2
    Conserved Domains (3) summary
    COG3064
    Location:540 → 625
    TolA; Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis]
    pfam00233
    Location:227 → 455
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  4. XM_035448644.1 → XP_035304535.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

    UniProtKB/TrEMBL
    A0A8C2LY76, A0A9J7H608
    Related
    ENSCGRP00015031643.2, ENSCGRT00015038651.2
    Conserved Domains (3) summary
    PTZ00121
    Location:502 → 588
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:186 → 414
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:45 → 101
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  5. XM_035448645.1 → XP_035304536.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    A0A8C2LY76, A0A9J7KC99
    Conserved Domains (3) summary
    PTZ00121
    Location:430 → 516
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:114 → 342
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:1 → 29
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  6. XM_035448646.1 → XP_035304537.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    A0A8C2LY76, A0A9J7KC99
    Conserved Domains (3) summary
    PTZ00121
    Location:430 → 516
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:114 → 342
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:1 → 29
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

RNA

  1. XR_004771036.1 RNA Sequence

    Related
    ENSCGRT00015038615.2

  2. XR_004771037.1 RNA Sequence

Nucleotide Protein Strain
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