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SPTLC1P2 serine palmitoyltransferase long chain base subunit 1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 100874498, updated on 10-Oct-2023

Summary

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Official Symbol
SPTLC1P2provided by HGNC
Official Full Name
serine palmitoyltransferase long chain base subunit 1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:39669
See related
AllianceGenome:HGNC:39669
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6p22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (23856564..23856836, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (23727874..23728151, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (23856792..23857064, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374976 Neighboring gene uncharacterized LOC124901276 Neighboring gene Sharpr-MPRA regulatory region 10928 Neighboring gene NANOG hESC enhancer GRCh37_chr6:23716734-23717235 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:23804320-23804820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:23804821-23805321 Neighboring gene putative UPF0607 protein ENSP00000332738-like Neighboring gene ISG20L2 pseudogene 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 58

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032342.2 

    Range
    101..373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    23856564..23856836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    23727874..23728151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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