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PCYB_052050 2-oxoglutarate dehydrogenase E1 component mitochondrial precursor [ Plasmodium cynomolgi strain B ]

Gene ID: 14691576, updated on 17-May-2024

Summary

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Gene symbol
PCYB_052050
Gene description
2-oxoglutarate dehydrogenase E1 component mitochondrial precursor
Primary source
PlasmoDB:PCYB_052050
Locus tag
PCYB_052050
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Plasmodium cynomolgi strain B (strain: B)
Lineage
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Plasmodium)
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
NC_020398.1 (465506..468931, complement)

NC_020398.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene C-13 antigen

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020398.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Tachibana S, et al. Nat Genet, 2012 Sep. PMID 22863735, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
2-oxoglutarate dehydrogenase E1 component mitochondrial precursor
XP_004221134.1
  • putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_020398.1 Reference assembly

    Range
    465506..468931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004221086.1 → XP_004221134.1  2-oxoglutarate dehydrogenase E1 component mitochondrial precursor [Plasmodium cynomolgi strain B]

    See identical proteins and their annotated locations for XP_004221134.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K6V7T6
    Conserved Domains (5) summary
    PRK09404
    Location:28 → 1027
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
    cd02016
    Location:269 → 535
    TPP_E1_OGDC_like; Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of ...
    pfam02779
    Location:655 → 863
    Transket_pyr; Transketolase, pyrimidine binding domain
    pfam16078
    Location:38 → 67
    2-oxogl_dehyd_N; 2-oxoglutarate dehydrogenase N-terminus
    pfam16870
    Location:872 → 1026
    OxoGdeHyase_C; 2-oxoglutarate dehydrogenase C-terminal
Nucleotide Protein
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