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Slc5a1 solute carrier family 5 (sodium/glucose cotransporter), member 1 [ Mus musculus (house mouse) ]

Gene ID: 20537, updated on 21-Apr-2024

Summary

Official Symbol
Slc5a1provided by MGI
Official Full Name
solute carrier family 5 (sodium/glucose cotransporter), member 1provided by MGI
Primary source
MGI:MGI:107678
See related
Ensembl:ENSMUSG00000011034 AllianceGenome:MGI:107678
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sglt1
Summary
Enables glucose transmembrane transporter activity. Involved in regulation of transporter activity. Acts upstream of or within glucose transmembrane transport; intestinal absorption; and metanephros development. Located in apical plasma membrane and brush border. Is expressed in alimentary system; brain; and urinary system. Orthologous to human SLC5A1 (solute carrier family 5 member 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum adult (RPKM 227.7), small intestine adult (RPKM 214.0) and 3 other tissues See more
Orthologs
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Genomic context

Location:
5 B1; 5 17.46 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (33261563..33320043)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (33104219..33162699)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L35A, pseudogene 5 Neighboring gene predicted gene, 57738 Neighboring gene STARR-seq mESC enhancer starr_12816 Neighboring gene STARR-seq mESC enhancer starr_12817 Neighboring gene STARR-positive B cell enhancer ABC_E3567 Neighboring gene spondin 2, extracellular matrix protein Neighboring gene predicted gene, 54327

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (1)  1 citation
  • Endonuclease-mediated (3) 

Pathways from PubChem

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables D-glucose transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables alpha-glucoside transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables galactose:sodium symporter activity ISO
Inferred from Sequence Orthology
more info
 
enables glucose transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables glucose transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables glucose:sodium symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables glucose:sodium symporter activity IDA
Inferred from Direct Assay
more info
PubMed 
enables glucose:sodium symporter activity ISO
Inferred from Sequence Orthology
more info
 
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables water transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in alpha-glucoside transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within carbohydrate transport IEA
Inferred from Electronic Annotation
more info
 
involved_in glucose import across plasma membrane ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within glucose transmembrane transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within glucose transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
involved_in intestinal D-glucose absorption IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within intestinal absorption IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within metanephros development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in renal glucose absorption IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to inorganic substance ISO
Inferred from Sequence Orthology
more info
 
involved_in sodium ion import across plasma membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in sodium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transepithelial water transport ISO
Inferred from Sequence Orthology
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in transport across blood-brain barrier ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in apical plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in apical plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in brush border IDA
Inferred from Direct Assay
more info
PubMed 
located_in brush border membrane ISO
Inferred from Sequence Orthology
more info
 
located_in cell-cell junction ISO
Inferred from Sequence Orthology
more info
 
located_in early endosome ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
sodium/glucose cotransporter 1
Names
Na(+)/glucose cotransporter 1
high affinity sodium-glucose cotransporter
solute carrier family 5, member 1
solute carrier family 5, member alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019810.4NP_062784.3  sodium/glucose cotransporter 1

    See identical proteins and their annotated locations for NP_062784.3

    Status: VALIDATED

    Source sequence(s)
    AC122203, AK033512, AK085602, BE688659
    Consensus CDS
    CCDS19199.1
    UniProtKB/TrEMBL
    Q8CCA7, Q9QXI6
    Related
    ENSMUSP00000011178.3, ENSMUST00000011178.5
    Conserved Domains (1) summary
    cl00456
    Location:27665
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    33261563..33320043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)