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Rps26 ribosomal protein S26 [ Rattus norvegicus (Norway rat) ]

Gene ID: 27139, updated on 11-Apr-2024

Summary

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Official Symbol
Rps26provided by RGD
Official Full Name
ribosomal protein S26provided by RGD
Primary source
RGD:621044
See related
AllianceGenome:RGD:621044
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Part of cytosolic small ribosomal subunit. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in Spleen (RPKM 4256.9), Thymus (RPKM 3949.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
7q11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (1641846..1643404, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (1057332..1058882, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (3052112..3053662, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S27a, pseudogene 11 Neighboring gene prefoldin subunit 1, pseudogene 1 Neighboring gene IKAROS family zinc finger 4 Neighboring gene sulfite oxidase Neighboring gene RAB5B, member RAS oncogene family Neighboring gene uncharacterized LOC120093528

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Affinity labelling of rat liver ribosomal protein S26 by heptauridylate containing a 5'-terminal alkylating group. Stahl J, et al. Mol Biol Rep, 1984 Jan. PMID 6708946
  2. Molecular cloning and nucleotide sequence of DNA complementary to rat ribosomal protein S26 messenger RNA. Kuwano Y, et al. J Biochem, 1985 Apr. PMID 2993263
  3. Seizures are regulated by ubiquitin-specific peptidase 9 X-linked (USP9X), a de-ubiquitinase. Paemka L, et al. PLoS Genet, 2015 Mar. PMID 25763846, Free PMC Article
  4. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, et al. J Biol Chem, 1977 Dec 25. PMID 925037
  5. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, et al. J Cell Biol, 2010 Sep 6. PMID 20819938, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
  
involved_in cytoplasmic translation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in negative regulation of RNA splicing ISO
Inferred from Sequence Orthology
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasmic side of rough endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
  
located_in ribosome ISO
Inferred from Sequence Orthology
more info
  
located_in ribosome ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
is_active_in synapse ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein eS26
Names
40S ribosomal protein S26

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013224.1 → NP_037356.1  small ribosomal subunit protein eS26

    See identical proteins and their annotated locations for NP_037356.1

    Status: PROVISIONAL

    Source sequence(s)
    X02414
    UniProtKB/Swiss-Prot
    P62856
    UniProtKB/TrEMBL
    A6KSG0, D3Z8D7
    Conserved Domains (1) summary
    pfam01283
    Location:1 → 101
    Ribosomal_S26e; Ribosomal protein S26e

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    1641846..1643404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063263070.1 → XP_063119140.1  small ribosomal subunit protein eS26 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P62856.3 GenPept UniProtKB/Swiss-Prot:P62856

Gene LinkOut

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