klf15 Kruppel like factor 15 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: klf15provided by ZNC
Official Full Name: Kruppel like factor 15provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7844
See related: Ensembl:ENSDARG00000091127 AllianceGenome:ZFIN:ZDB-GENE-030131-7844
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj36d07; sb:eu823; wu:fj36d07; zgc:111859
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in several structures, including alar plate midbrain region; epidermal cell; epidermis; median fin fold; and midbrain. Orthologous to human KLF15 (Kruppel like factor 15). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (35187683..35195889, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (35088769..35096975, complement)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in anatomical structure morphogenesis	IEA Inferred from Electronic Annotation more info
involved_in embryo development	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Krueppel-like factor 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212746.3 → NP_997911.2 Krueppel-like factor 15

See identical proteins and their annotated locations for NP_997911.2

Status: PROVISIONAL

Source sequence(s)

BC098596

UniProtKB/TrEMBL

Q4KMF2

Related

ENSDARP00000107271.2, ENSDART00000122429.3

Conserved Domains (3) summary

sd00017
Location:349 → 371

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:393 → 418

zf-H2C2_2; Zinc-finger double domain

pfam15909
Location:349 → 428

zf-C2H2_8; C2H2-type zinc ribbon