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ptprma protein tyrosine phosphatase receptor type Ma [ Danio rerio (zebrafish) ]

Gene ID: 386769, updated on 27-Mar-2024

Summary

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Official Symbol
ptprmaprovided by ZNC
Official Full Name
protein tyrosine phosphatase receptor type Maprovided by ZNC
Primary source
ZFIN:ZDB-GENE-031113-24
See related
AllianceGenome:ZFIN:ZDB-GENE-031113-24
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb984; ptprm; zgc:110218
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; musculature system; nervous system; notochord; and ventral mesoderm. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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Location:
chromosome: 24
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (41516335..41656853, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (41450449..41756800, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC799914 Neighboring gene uncharacterized LOC100330485 Neighboring gene leucine rich repeat containing 30a Neighboring gene laminin, alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hedgehog signalling acts upstream of Laminin alpha1 transcription in the zebrafish paraxial mesoderm. Pickering J, et al. Matrix Biol, 2017 Oct. PMID 27856309
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein tyrosine phosphatase receptor type Ma
Names
protein tyrosine phosphatase, receptor type, M, a
NP_001018143.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001018133.2 → NP_001018143.1  protein tyrosine phosphatase receptor type Ma precursor

    See identical proteins and their annotated locations for NP_001018143.1

    Status: PROVISIONAL

    Source sequence(s)
    BC165678
    UniProtKB/TrEMBL
    Q503S4
    Conserved Domains (6) summary
    cd06263
    Location:27 → 183
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00060
    Location:386 → 470
    FN3; Fibronectin type 3 domain
    smart00410
    Location:193 → 275
    IG_like; Immunoglobulin like
    cd00063
    Location:502 → 584
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00047
    Location:193 → 275
    ig; Immunoglobulin domain
    pfam00629
    Location:27 → 183
    MAM; MAM domain, meprin/A5/mu

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    41516335..41656853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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