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cd2bp2 CD2 (cytoplasmic tail) binding protein 2 [ Danio rerio (zebrafish) ]

Gene ID: 393936, updated on 27-Mar-2024

Summary

Official Symbol
cd2bp2provided by ZNC
Official Full Name
CD2 (cytoplasmic tail) binding protein 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-925
See related
Ensembl:ENSDARG00000027357 AllianceGenome:ZFIN:ZDB-GENE-040426-925
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56165
Summary
Predicted to be part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See cd2bp2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32832546..32842383)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32700832..32710669)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene myosin light chain, phosphorylatable, fast skeletal muscle a Neighboring gene PH domain containing endocytic trafficking adaptor 2 Neighboring gene proline rich 14 Neighboring gene si:dkey-16l2.20 Neighboring gene RUS family member 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General protein information

Preferred Names
CD2 antigen cytoplasmic tail-binding protein 2
Names
CD2 antigen (cytoplasmic tail) binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200961.1NP_957255.1  CD2 antigen cytoplasmic tail-binding protein 2

    See identical proteins and their annotated locations for NP_957255.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045960
    UniProtKB/TrEMBL
    Q7ZV87
    Related
    ENSDARP00000033455.4, ENSDART00000035759.6
    Conserved Domains (1) summary
    pfam02213
    Location:319374
    GYF; GYF domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32832546..32842383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394535.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    313633..323470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395227.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    192996..202710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)