rpl18a ribosomal protein L18a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rpl18aprovided by ZNC
Official Full Name: ribosomal protein L18aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1071
See related: Ensembl:ENSDARG00000025073 AllianceGenome:ZFIN:ZDB-GENE-040426-1071
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: rpl-20Co; zgc:56546
Summary: Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL18A (ribosomal protein L18a). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (391360..397928)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (377912..384480)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: large ribosomal subunit protein eL20

Names: 60S ribosomal protein L18a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201060.1 → NP_957354.1 large ribosomal subunit protein eL20

See identical proteins and their annotated locations for NP_957354.1

Status: PROVISIONAL

Source sequence(s)

BC049045

UniProtKB/Swiss-Prot

Q1LVB1, Q7ZWJ4

Related

ENSDARP00000038658.5, ENSDART00000030215.6

Conserved Domains (1) summary

COG2157
Location:69 → 153

RPL20A; Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]