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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001197083.2 → NP_001184012.1 sterol regulatory element-binding protein 1
Status: INFERRED
- Source sequence(s)
-
JAAUVH010000371
- UniProtKB/TrEMBL
- A0A8C0RX57, A0A8I3PWZ6, A0A8I3S753
- Related
- ENSCAFP00845032736.1, ENSCAFT00845041740.1
- Conserved Domains (1) summary
-
- cd00083
Location:355 → 412
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference ROS_Cfam_1.0
Genomic
-
NC_051809.1 Reference ROS_Cfam_1.0
- Range
-
41769693..41792654
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038664048.1 → XP_038519976.1 sterol regulatory element-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A8I3S753
- Conserved Domains (2) summary
-
- cd18921
Location:320 → 394
- bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins
- pfam15967
Location:151 → 408
- Nucleoporin_FG2; Nucleoporin FG repeated region
-
XM_038664049.1 → XP_038519977.1 sterol regulatory element-binding protein 1 isoform X2
- UniProtKB/TrEMBL
- A0A8C0L9G5, A0A8C0LWF4, A0A8I3PI45, A0A8I3S753
- Related
- ENSCAFP00845032076.1, ENSCAFT00845040948.1
- Conserved Domains (2) summary
-
- cd18921
Location:320 → 394
- bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins
- pfam15967
Location:151 → 408
- Nucleoporin_FG2; Nucleoporin FG repeated region
-
XM_038664051.1 → XP_038519979.1 sterol regulatory element-binding protein 1 isoform X4
- UniProtKB/TrEMBL
-
A0A8I3S753
- Conserved Domains (2) summary
-
- cd18921
Location:353 → 427
- bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins
- pfam15967
Location:184 → 441
- Nucleoporin_FG2; Nucleoporin FG repeated region
-
XM_038664050.1 → XP_038519978.1 sterol regulatory element-binding protein 1 isoform X3
- UniProtKB/TrEMBL
- A0A8C0LC26, A0A8I3PN16, A0A8I3S753, A0A8P0PMF3
- Related
- ENSCAFP00845032820.1, ENSCAFT00845041841.1
- Conserved Domains (2) summary
-
- cd18921
Location:296 → 370
- bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins
- pfam15967
Location:127 → 384
- Nucleoporin_FG2; Nucleoporin FG repeated region
Alternate UMICH_Zoey_3.1
Genomic
-
NC_049265.1 Alternate UMICH_Zoey_3.1
- Range
-
41737352..41760245
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate UNSW_CanFamBas_1.0
Genomic
-
NC_049746.1 Alternate UNSW_CanFamBas_1.0
- Range
-
41684736..41707631
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate UU_Cfam_GSD_1.0
Genomic
-
NC_049226.1 Alternate UU_Cfam_GSD_1.0
- Range
-
41876687..41899587
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate Dog10K_Boxer_Tasha Primary Assembly
Genomic
-
NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly
- Range
-
41802335..41825236
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)