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atp5pf ATP synthase peripheral stalk subunit F6 [ Danio rerio (zebrafish) ]

Gene ID: 406599, updated on 7-Apr-2024

Summary

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Official Symbol
atp5pfprovided by ZNC
Official Full Name
ATP synthase peripheral stalk subunit F6provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2534
See related
Ensembl:ENSDARG00000014313 AllianceGenome:ZFIN:ZDB-GENE-040426-2534
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
atp5j; zgc:77541; wu:fa66e04
Summary
Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See atp5pf in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (610327..614663, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (615148..619453, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene junctional adhesion molecule 2a Neighboring gene amyloid beta (A4) precursor protein a Neighboring gene cysteine/tyrosine-rich 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Eriocitrin ameliorates diet-induced hepatic steatosis with activation of mitochondrial biogenesis. Hiramitsu M, et al. Sci Rep, 2014 Jan 15. PMID 24424211, Free PMC Article
  2. Coronary Revascularization During Heart Regeneration Is Regulated by Epicardial and Endocardial Cues and Forms a Scaffold for Cardiomyocyte Repopulation. Marín-Juez R, et al. Dev Cell, 2019 Nov 18. PMID 31743664, Free PMC Article
  3. Variation of DNA Methylome of Zebrafish Cells under Cold Pressure. Han B, et al. PLoS One, 2016. PMID 27494266, Free PMC Article
  4. Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish. Fukuda R, et al. EMBO Rep, 2020 Aug 5. PMID 32648304, Free PMC Article
  5. Characterization of Intracellular Peptides from Zebrafish (Danio rerio) Brain. Teixeira CMM, et al. Zebrafish, 2019 Jun. PMID 31017557

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  
part_of mitochondrial proton-transporting ATP synthase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
part_of proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP synthase-coupling factor 6, mitochondrial
Names
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
NP_998472.1
XP_005168047.1
XP_017208459.1
XP_017208473.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213307.1 → NP_998472.1  ATP synthase-coupling factor 6, mitochondrial

    See identical proteins and their annotated locations for NP_998472.1

    Status: PROVISIONAL

    Source sequence(s)
    BC066613
    UniProtKB/TrEMBL
    A0A8M1PGT6, Q6NYF7
    Related
    ENSDARP00000005644.6, ENSDART00000004062.8
    Conserved Domains (1) summary
    pfam05511
    Location:1 → 99
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    610327..614663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167990.4 → XP_005168047.1  ATP synthase-coupling factor 6, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8M6YX34, B8JM34
    Related
    ENSDARP00000114450.1, ENSDART00000134456.3
    Conserved Domains (1) summary
    pfam05511
    Location:1 → 99
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

  2. XM_017352984.2 → XP_017208473.1  ATP synthase-coupling factor 6, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8M6YX34, B8JM34
    Related
    ENSDARP00000113309.1, ENSDART00000147937.3
    Conserved Domains (1) summary
    pfam05511
    Location:1 → 99
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

  3. XM_017352970.2 → XP_017208459.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8M1PGT6, Q6NYF7
    Conserved Domains (1) summary
    pfam05511
    Location:1 → 99
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
Nucleotide Protein
Heading Accession and Version

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