rps13 ribosomal protein S13 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rps13provided by ZNC
Official Full Name: ribosomal protein S13provided by ZNC
Primary source: ZFIN:ZDB-GENE-040625-52
See related: Ensembl:ENSDARG00000036298 AllianceGenome:ZFIN:ZDB-GENE-040625-52
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb14f11; fd13f08; fd60g01; zgc:91809; wu:fb14f11; wu:fd13f08; wu:fd60g01
Summary: Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (27041366..27044003)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (26770173..26772810)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables small ribosomal subunit rRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic small ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 40S ribosomal protein S13

NP_001002079.1

EC 3.6.5.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002079.1 → NP_001002079.1 40S ribosomal protein S13

See identical proteins and their annotated locations for NP_001002079.1

Status: PROVISIONAL

Source sequence(s)

BC072552

UniProtKB/TrEMBL

A0A2R8Q9G2, F6NYQ6, Q6IMW6

Related

ENSDARP00000052729.3, ENSDART00000052730.6

Conserved Domains (3) summary

PTZ00072
Location:4 → 151

PTZ00072; 40S ribosomal protein S13; Provisional

cd00353
Location:70 → 145

Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...

pfam08069
Location:4 → 60

Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain