PTPN12 protein tyrosine phosphatase non-receptor type 12 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: PTPN12provided by VGNC
Official Full Name: protein tyrosine phosphatase non-receptor type 12provided by VGNC
Primary source: VGNC:VGNC:4484
Locus tag: CK820_G0047775
See related: Ensembl:ENSPTRG00000019337
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 7

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	6	NC_072404.2 (86889651..86995645)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	7	NC_072405.1 (83237635..83343604)

Chromosome 6 - NC_072404.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

GDB:1318038 (e-PCR)
- UniSTS:24082

G06466 (e-PCR)
- UniSTS:72482

GDB:1318521 (e-PCR)
- UniSTS:35394

PTPN12_1837 (e-PCR)
- UniSTS:280939

SHGC-105103 (e-PCR)
- UniSTS:169101

GDB:1317318 (e-PCR)
- UniSTS:29121

RH77974 (e-PCR)
- UniSTS:75501

GDB:1317990 (e-PCR)
- UniSTS:10735

PTPN12 (e-PCR)
- UniSTS:56048

PTPN12 (e-PCR)
- UniSTS:503539

D20S1000 (e-PCR)
- UniSTS:154616

GDB:305494 (e-PCR)
- UniSTS:156412

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables non-membrane spanning protein tyrosine phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cellular response to epidermal growth factor stimulus	IEA Inferred from Electronic Annotation more info	PubMed
involved_in peptidyl-tyrosine dephosphorylation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of epidermal growth factor receptor signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: tyrosine-protein phosphatase non-receptor type 12

XP_003318598.4

EC 3.1.3.48

XP_009451699.4

EC 3.1.3.48

XP_009451700.4

EC 3.1.3.48

XP_016813126.2

EC 3.1.3.48

XP_063670707.1

EC 3.1.3.48

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

86889651..86995645

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003318550.7 → XP_003318598.4 tyrosine-protein phosphatase non-receptor type 12 isoform X3

UniProtKB/TrEMBL

K7BB45
XM_016957637.3 → XP_016813126.2 tyrosine-protein phosphatase non-receptor type 12 isoform X5
XM_063814637.1 → XP_063670707.1 tyrosine-protein phosphatase non-receptor type 12 isoform X4
XM_009453424.5 → XP_009451699.4 tyrosine-protein phosphatase non-receptor type 12 isoform X1
XM_009453425.5 → XP_009451700.4 tyrosine-protein phosphatase non-receptor type 12 isoform X2