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RFC5 replication factor C subunit 5 [ Canis lupus familiaris (dog) ]

Gene ID: 477499, updated on 5-Mar-2024

Summary

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Official Symbol
RFC5provided by VGNC
Official Full Name
replication factor C subunit 5provided by VGNC
Primary source
VGNC:VGNC:45496
See related
Ensembl:ENSCAFG00845027138
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RFC5 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (14690209..14701425)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (14421469..14432516)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (14762460..14773488)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (14655104..14666296)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (14727103..14738138)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 1 Neighboring gene uncharacterized LOC111092579 Neighboring gene kinase suppressor of ras 2 Neighboring gene uncharacterized LOC119866167 Neighboring gene uncharacterized LOC119866168 Neighboring gene WD repeat and SOCS box containing 2 Neighboring gene V-set and immunoglobulin domain containing 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA replication factor C complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
replication factor C subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    14690209..14701425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038436864.1 → XP_038292792.1  replication factor C subunit 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0Z6X5, A0A8C0Z723, A0A8I3PVU7
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 312
    rfc; replication factor C small subunit; Reviewed

  2. XM_038436865.1 → XP_038292793.1  replication factor C subunit 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0Z6X5
    Related
    ENSCAFP00845037634.1, ENSCAFT00845047969.1
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 284
    rfc; replication factor C small subunit; Reviewed

  3. XM_038436863.1 → XP_038292791.1  replication factor C subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L1I6, A0A8C0TU87, A0A8C0Z6X5, A0A8I3SAL9
    Related
    ENSCAFP00845037568.1, ENSCAFT00845047890.1
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 328
    rfc; replication factor C small subunit; Reviewed

RNA

  1. XR_005302392.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    14655104..14666296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038511759.1 → XP_038367687.1  replication factor C subunit 5 isoform X2

    Conserved Domains (1) summary
    PRK00440
    Location:15 → 312
    rfc; replication factor C small subunit; Reviewed

  2. XM_038511760.1 → XP_038367688.1  replication factor C subunit 5 isoform X3

    Conserved Domains (1) summary
    PRK00440
    Location:15 → 284
    rfc; replication factor C small subunit; Reviewed

  3. XM_038511758.1 → XP_038367686.1  replication factor C subunit 5 isoform X1

    Conserved Domains (1) summary
    PRK00440
    Location:15 → 328
    rfc; replication factor C small subunit; Reviewed

RNA

  1. XR_005345478.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    14727103..14738138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038639445.1 → XP_038495373.1  replication factor C subunit 5 isoform X2

    Conserved Domains (1) summary
    PRK00440
    Location:15 → 312
    rfc; replication factor C small subunit; Reviewed

  2. XM_038639446.1 → XP_038495374.1  replication factor C subunit 5 isoform X3

    Conserved Domains (1) summary
    PRK00440
    Location:15 → 284
    rfc; replication factor C small subunit; Reviewed

  3. XM_038639444.1 → XP_038495372.1  replication factor C subunit 5 isoform X1

    Conserved Domains (1) summary
    PRK00440
    Location:15 → 328
    rfc; replication factor C small subunit; Reviewed

RNA

  1. XR_005413061.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    14762460..14773488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575258.1 → XP_038431186.1  replication factor C subunit 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0Z6X5, A0A8C0Z723, A0A8I3PVU7
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 312
    rfc; replication factor C small subunit; Reviewed

  2. XM_038575259.1 → XP_038431187.1  replication factor C subunit 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0Z6X5
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 284
    rfc; replication factor C small subunit; Reviewed

  3. XM_038575257.1 → XP_038431185.1  replication factor C subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L1I6, A0A8C0TU87, A0A8C0Z6X5, A0A8I3SAL9
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 328
    rfc; replication factor C small subunit; Reviewed

RNA

  1. XR_005379236.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    14421469..14432516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022410522.2 → XP_022266230.1  replication factor C subunit 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0Z6X5, A0A8C0Z723, A0A8I3PVU7
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 312
    rfc; replication factor C small subunit; Reviewed

  2. XM_022410523.2 → XP_022266231.1  replication factor C subunit 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0Z6X5
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 284
    rfc; replication factor C small subunit; Reviewed

  3. XM_534696.7 → XP_534696.3  replication factor C subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L1I6, A0A8C0TU87, A0A8C0Z6X5, A0A8I3SAL9
    Conserved Domains (1) summary
    PRK00440
    Location:15 → 328
    rfc; replication factor C small subunit; Reviewed

RNA

  1. XR_002619733.2 RNA Sequence

Nucleotide Protein
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