Cyren cell cycle regulator of NHEJ [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Cyrenprovided by RGD
Official Full Name: cell cycle regulator of NHEJprovided by RGD
Primary source: RGD:1563238
See related: Ensembl:ENSRNOG00000026958 AllianceGenome:RGD:1563238
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Mri
Summary: Predicted to be involved in double-strand break repair via nonhomologous end joining; immunoglobulin V(D)J recombination; and negative regulation of double-strand break repair via nonhomologous end joining. Predicted to be active in cytoplasm; nucleus; and site of double-strand break. Orthologous to human CYREN (cell cycle regulator of NHEJ). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Liver (RPKM 115.8), Kidney (RPKM 98.1) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 4q22

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (64514477..64519896, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (63547311..63553394, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (62391770..62397162, complement)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Characterizes the hamster ortholog and suggests that it may modulate the ability of the proteasome to degrade retroviral cores upon cellular infection.
Title: Isolation, characterization, and genetic complementation of a cellular mutant resistant to retroviral infection.

Submit: New GeneRIF Correction

General gene information

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Markers

AI234019 (e-PCR)
- UniSTS:250181

RH134505 (e-PCR)
- UniSTS:217785

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in double-strand break repair via nonhomologous end joining	IBA Inferred from Biological aspect of Ancestor more info
involved_in double-strand break repair via nonhomologous end joining	IEA Inferred from Electronic Annotation more info
involved_in double-strand break repair via nonhomologous end joining	ISO Inferred from Sequence Orthology more info
involved_in double-strand break repair via nonhomologous end joining	ISS Inferred from Sequence or Structural Similarity more info
involved_in immunoglobulin V(D)J recombination	IEA Inferred from Electronic Annotation more info
involved_in immunoglobulin V(D)J recombination	ISO Inferred from Sequence Orthology more info
involved_in immunoglobulin V(D)J recombination	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of double-strand break repair via nonhomologous end joining	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of double-strand break repair via nonhomologous end joining	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of double-strand break repair via nonhomologous end joining	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
located_in site of double-strand break	IEA Inferred from Electronic Annotation more info
is_active_in site of double-strand break	ISO Inferred from Sequence Orthology more info
is_active_in site of double-strand break	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: cell cycle regulator of non-homologous end joining

Names: modulator of retrovirus infection homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001024325.1 → NP_001019496.1 cell cycle regulator of non-homologous end joining

See identical proteins and their annotated locations for NP_001019496.1

Status: PROVISIONAL

Source sequence(s)

BC079043

UniProtKB/Swiss-Prot

Q6AYH4

UniProtKB/TrEMBL

A0A8I6GL65, A6IEN1

Related

ENSRNOP00000034483.2, ENSRNOT00000029818.3

Conserved Domains (1) summary

pfam15325
Location:53 → 160

MRI; Modulator of retrovirus infection

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086022.1 Reference GRCr8

Range

64514477..64519896 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006236275.5 → XP_006236337.1 cell cycle regulator of non-homologous end joining isoform X1

Conserved Domains (1) summary

pfam15325
Location:20 → 127

MRI; Modulator of retrovirus infection