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AKIP1 A-kinase interacting protein 1 [ Homo sapiens (human) ]

Gene ID: 56672, updated on 3-Apr-2024

Summary

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Official Symbol
AKIP1provided by HGNC
Official Full Name
A-kinase interacting protein 1provided by HGNC
Primary source
HGNC:HGNC:1170
See related
Ensembl:ENSG00000166452 MIM:609191; AllianceGenome:HGNC:1170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BCA3; C11orf17
Summary
This gene encodes a nuclear protein that interacts with protein kinase A catalytic subunit, and regulates the effect of the cAMP-dependent protein kinase signaling pathway on the NF-kappa-B activation cascade. Alternatively spliced transcript variants have been described for this gene. [provided by RefSeq, Oct 2011]
Expression
Ubiquitous expression in thyroid (RPKM 4.3), adrenal (RPKM 4.1) and 25 other tissues See more
Orthologs
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Genomic context

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Location:
11p15.4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (8911189..8920079)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (8995274..9004239)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (8932736..8941626)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene DENN domain containing 2B Neighboring gene DENND2B antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:8827143-8827644 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:8827645-8828144 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:8850107-8850606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:8853387-8854188 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:8854189-8854989 Neighboring gene RNA, 5S ribosomal pseudogene 330 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:8884480-8884980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:8884981-8885481 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3116 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4394 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4395 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:8946857-8947641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:8947642-8948425 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:8954113-8954951 Neighboring gene chromosome 11 open reading frame 16 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3117 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3118 Neighboring gene achaete-scute family bHLH transcription factor 3 Neighboring gene TMEM9 domain family member B Neighboring gene TMEM9B antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Silencing of AKIP1 Suppresses the Proliferation, Migration, and Epithelial-Mesenchymal Transition Process of Glioma Cells by Upregulating DLG2. Chen Z, et al. Biomed Res Int, 2022. PMID 35111846, Free PMC Article
  2. Upregulation of a kinase interacting protein 1 in tongue squamous cell carcinoma correlates with lymph node metastasis and poor overall survival. Sun Y, et al. Medicine (Baltimore), 2021 Apr 9. PMID 33832094, Free PMC Article
  3. A-kinase interacting protein 1 is sufficiently expressed and positively associates with WHO grade, meanwhile predicts unfavorable overall survival independently in glioma patients. Shen S, et al. Medicine (Baltimore), 2021 Jan 29. PMID 33530151, Free PMC Article
  4. Correlation of A-Kinase Interacting Protein 1 With Clinical Features, Treatment Response, and Survival Profiles in Patients With Multiple Myeloma. Wang W, et al. Technol Cancer Res Treat, 2020 Jan-Dec. PMID 32799782, Free PMC Article
  5. A-kinase interacting protein 1 as a potential biomarker of advanced tumor features and increased recurrence risk in papillary thyroid carcinoma patients. Zhang L, et al. J Clin Lab Anal, 2020 Oct. PMID 32643206, Free PMC Article

See all (51) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Ebola virus VP35 hijacks the PKA-CREB1 pathway for replication and pathogenesis by AKIP1 association.
    Title: Ebola virus VP35 hijacks the PKA-CREB1 pathway for replication and pathogenesis by AKIP1 association.
  2. Silencing of AKIP1 Suppresses the Proliferation, Migration, and Epithelial-Mesenchymal Transition Process of Glioma Cells by Upregulating DLG2.
    Title: Silencing of AKIP1 Suppresses the Proliferation, Migration, and Epithelial-Mesenchymal Transition Process of Glioma Cells by Upregulating DLG2.
  3. Correlation of A-Kinase Interacting Protein 1 With Clinical Features, Treatment Response, and Survival Profiles in Patients With Multiple Myeloma.
    Title: Correlation of A-Kinase Interacting Protein 1 With Clinical Features, Treatment Response, and Survival Profiles in Patients With Multiple Myeloma.
  4. PKA and AKIP1 interact to mediate cAMP-driven COX-2 expression: A potentially pivotal interaction in preterm and term labour.
    Title: PKA and AKIP1 interact to mediate cAMP-driven COX-2 expression: A potentially pivotal interaction in preterm and term labour.
  5. A-kinase interacting protein 1 as a potential biomarker of advanced tumor features and increased recurrence risk in papillary thyroid carcinoma patients.
    Title: A-kinase interacting protein 1 as a potential biomarker of advanced tumor features and increased recurrence risk in papillary thyroid carcinoma patients.
  6. A-kinase interacting protein 1 (AKIP1) associates with advanced overall disease condition, tumor properties, and unfavorable prognosis in hepatocellular carcinoma patients.
    Title: A-kinase interacting protein 1 (AKIP1) associates with advanced overall disease condition, tumor properties, and unfavorable prognosis in hepatocellular carcinoma patients.
  7. Identification of A-kinase interacting protein 1 as a potential biomarker for risk and prognosis of acute myeloid leukemia.
    Title: Identification of A-kinase interacting protein 1 as a potential biomarker for risk and prognosis of acute myeloid leukemia.
  8. Upregulation of a kinase interacting protein 1 in tongue squamous cell carcinoma correlates with lymph node metastasis and poor overall survival.
    Title: Upregulation of a kinase interacting protein 1 in tongue squamous cell carcinoma correlates with lymph node metastasis and poor overall survival.
  9. AKIP1 expression in tumor tissue as a new biomarker for disease monitoring and prognosis in non-small cell lung cancer: Results of a retrospective study.
    Title: AKIP1 expression in tumor tissue as a new biomarker for disease monitoring and prognosis in non-small cell lung cancer: Results of a retrospective study.
  10. A-kinase-interacting protein 1 promotes EMT and metastasis via PI3K/Akt/IKKbeta pathway in cervical cancer.
    Title: A-kinase-interacting protein 1 promotes EMT and metastasis via PI3K/Akt/IKKβ pathway in cervical cancer.
Submit: New GeneRIF Correction See all GeneRIFs (28)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
retropepsin gag-pol HIV-1 PR(D25N) directly interacts with BCA3 in cells and co-localizes with BCA3 in the cytoplasm, particularly at the mitochondria PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
  
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  

General protein information

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Preferred Names
A-kinase-interacting protein 1
Names
A kinase (PRKA) interacting protein 1
breast cancer associated gene 3
koyt binding protein 1
koyt binding protein 2
koyt binding protein 3
proline-rich protein BCA3

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030417.1 RefSeqGene

    Range
    5036..13926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001206646.2 → NP_001193575.1  A-kinase-interacting protein 1 isoform b

    See identical proteins and their annotated locations for NP_001193575.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an in-frame coding exon in the 5' region compared to variant 1. This results in a shorter isoform (b) missing an internal protein segment compared to isoform a. Note, isoforms b and c are the same length, but have different sequences.
    Source sequence(s)
    AF493785, DB570956
    Consensus CDS
    CCDS55744.1
    UniProtKB/TrEMBL
    H0YCH8
    Related
    ENSP00000299576.5, ENST00000299576.9

  2. NM_001206647.2 → NP_001193576.1  A-kinase-interacting protein 1 isoform c

    See identical proteins and their annotated locations for NP_001193576.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an in-frame coding exon in the 3' region compared to variant 1. This results in a shorter isoform (c) missing an internal protein segment compared to isoform a. Note, isoforms b and c are the same length, but have different sequences.
    Source sequence(s)
    AF493784, DB570956
    Consensus CDS
    CCDS55743.1
    UniProtKB/TrEMBL
    H0YCH8
    Related
    ENSP00000310644.4, ENST00000309357.8

  3. NM_001206648.2 → NP_001193577.1  A-kinase-interacting protein 1 isoform d

    See identical proteins and their annotated locations for NP_001193577.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) lacks two in-frame coding exons compared to variant 1. This results in a shorter isoform (d) missing two internal protein segments compared to isoform a.
    Source sequence(s)
    AF493783, AW340643, DB570956
    UniProtKB/TrEMBL
    H0YCH8
    Related
    ENSP00000431602.1, ENST00000529942.1
    Conserved Domains (1) summary
    COG1470
    Location:114 → 153
    COG1470; Uncharacterized membrane protein [Function unknown]

  4. NM_020642.4 → NP_065693.2  A-kinase-interacting protein 1 isoform a

    See identical proteins and their annotated locations for NP_065693.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    AC026894, AF493783
    Consensus CDS
    CCDS7793.1
    UniProtKB/Swiss-Prot
    Q8NBS2, Q8TAC6, Q8TAD3, Q8TAE0, Q9NQ31
    Related
    ENSP00000310459.4, ENST00000309377.9

RNA

  1. NR_045417.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs at the 5' end compared to variant 1. It is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with the translation of the longer downstream ORF; translation of the upstream ORF renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC026894, AF493783, BC030996, BP355293

  2. NR_045418.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) differs at the 5' end and lacks an exon in the 3' region compared to variant 1. It is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with the translation of the longer downstream ORF; translation of the upstream ORF renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC026894, AF493783, BC030996, BM706322, BP355293

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    8911189..8920079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017018011.2 → XP_016873500.1  A-kinase-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8NBS2, Q8TAC6, Q8TAD3, Q8TAE0, Q9NQ31
    Related
    ENSP00000431331.1, ENST00000534147.5
    Conserved Domains (1) summary
    COG1470
    Location:168 → 207
    COG1470; Uncharacterized membrane protein [Function unknown]

  2. XM_047427261.1 → XP_047283217.1  A-kinase-interacting protein 1 isoform X2

    Related
    ENSP00000379885.2, ENST00000396648.6

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    8995274..9004239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054369366.1 → XP_054225341.1  A-kinase-interacting protein 1 isoform X2

  2. XM_054369365.1 → XP_054225340.1  A-kinase-interacting protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8NBS2, Q8TAC6, Q8TAD3, Q8TAE0, Q9NQ31

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001206645.1: Suppressed sequence

    Description
    NM_001206645.1: This RefSeq was permanently suppressed because it contains an upstream open reading frame with a strong Kozak signal, use of which will render this transcript a candidate for nonsense-mediated mRNA decay (NMD).

  2. NM_182901.3: Suppressed sequence

    Description
    NM_182901.3: This RefSeq was permanently suppressed because it contains an upstream open reading frame with a strong Kozak signal, use of which will render this transcript a candidate for nonsense-mediated mRNA decay (NMD).
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9NQ31.2 GenPept UniProtKB/Swiss-Prot:Q9NQ31

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