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cckar cholecystokinin A receptor [ Danio rerio (zebrafish) ]

Gene ID: 569038, updated on 27-Mar-2024

Summary

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Official Symbol
cckarprovided by ZNC
Official Full Name
cholecystokinin A receptorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-120404-2
See related
Ensembl:ENSDARG00000052089 AllianceGenome:ZFIN:ZDB-GENE-120404-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Human ortholog(s) of this gene implicated in obesity. Orthologous to human CCKAR (cholecystokinin A receptor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See cckar in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (62229435..62245178, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (61919465..61934854, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911431 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region b Neighboring gene uncharacterized LOC110439953 Neighboring gene TBC1 domain family, member 19 Neighboring gene stromal interaction molecule 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Effect of intracerebroventricular administration of two molecular forms of sulfated CCK octapeptide on anxiety-like behavior in the zebrafish danio rerio. Matsuda K, et al. Peptides, 2020 Aug. PMID 32445877
  2. Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. Gomez G, et al. PLoS One, 2012. PMID 22438865, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables gastrin receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cholecystokinin receptor type A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    62229435..62245178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692401.7 → XP_697493.2  cholecystokinin receptor type A

    UniProtKB/TrEMBL
    A0A8N7TFD1, E7F402
    Related
    ENSDARP00000068362.5, ENSDART00000073872.5
    Conserved Domains (2) summary
    pfam00001
    Location:64 → 372
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:54 → 195
    7tm_4; Olfactory receptor
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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