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PHATRDRAFT_29824 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195006, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_29824
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_29824
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 19
Exon count:
2
Sequence:
Chromosome: 19; NC_011687.1 (136354..142650)

Chromosome 19 - NC_011687.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011687.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isoleucine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoleucyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011687.1 Reference assembly

    Range
    136354..142650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002183264.1 → XP_002183300.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002183300.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9X4S7, B7G888
    Conserved Domains (4) summary
    cd07961
    Location:656 → 865
    Anticodon_Ia_Ile_ABEc; Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases
    cd00818
    Location:421 → 656
    IleRS_core; catalytic core domain of isoleucyl-tRNA synthetases
    PLN02882
    Location:1 → 1166
    PLN02882; aminoacyl-tRNA ligase
    cl00015
    Location:40 → 182
    nt_trans; nucleotidyl transferase superfamily
Nucleotide Protein
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