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PHATRDRAFT_48977 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195251, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_48977
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_48977
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_011688.1 (209881..211185)

Chromosome 20 - NC_011688.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011688.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydrosphinganine reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3-keto-sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011688.1 Reference assembly

    Range
    209881..211185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002183535.1 → XP_002183571.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002183571.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9TBM0, B7G932
    Conserved Domains (2) summary
    cd08939
    Location:54 → 277
    KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR
    pfam00106
    Location:56 → 250
    adh_short; short chain dehydrogenase
Nucleotide Protein
Heading Accession and Version

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