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pDLDH1 lipoamide dehydrogenase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195322, updated on 21-Dec-2023

Summary

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Gene symbol
pDLDH1
Gene description
lipoamide dehydrogenase
Locus tag
PHATRDRAFT_30113
Gene type
protein coding
RNA name
lipoamide dehydrogenase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See pDLDH1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Sequence:
Chromosome: 20; NC_011688.1 (551721..553830)

Chromosome 20 - NC_011688.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011688.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dihydrolipoyl dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
lipoamide dehydrogenase
XP_002183630.1
  • A plastid enzyme, serves as E3 of pyruvate dehydrogenase complex, with the enzymes acting in concert to generate acetyl-CoA and NADH for de novo fatty acid synthesis. Catalyzes the reaction: dihydrolipoamide + NAD+ = lipoamide + NADH + H+, using FAD as a co-factor.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011688.1 Reference assembly

    Range
    551721..553830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002183594.1 → XP_002183630.1  lipoamide dehydrogenase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002183630.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G9G3
    Conserved Domains (3) summary
    PRK06416
    Location:60 → 543
    PRK06416; dihydrolipoamide dehydrogenase; Reviewed
    pfam00070
    Location:238 → 316
    Pyr_redox; Pyridine nucleotide-disulphide oxidoreductase
    pfam02852
    Location:422 → 532
    Pyr_redox_dim; Pyridine nucleotide-disulphide oxidoreductase, dimerization domain
Nucleotide Protein
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