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HAD2 3-hydroxyacyl-coenzyme A dehydrogenase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195423, updated on 21-Dec-2023

Summary

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Gene symbol
HAD2
Gene description
3-hydroxyacyl-coenzyme A dehydrogenase
Locus tag
PHATRDRAFT_39681
Gene type
protein coding
RNA name
3-hydroxyacyl-coenzyme A dehydrogenase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 20
Exon count:
2
Sequence:
Chromosome: 20; NC_011688.1 (435277..436359, complement)

Chromosome 20 - NC_011688.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene protein fucoxanthin chlorophyll a/c protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011688.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
3-hydroxyacyl-coenzyme A dehydrogenase
XP_002183747.1
  • A short-chain dehydrogenase probably catalyzing the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011688.1 Reference assembly

    Range
    435277..436359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002183711.1 → XP_002183747.1  3-hydroxyacyl-coenzyme A dehydrogenase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002183747.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9TBS3, B7G9C0
    Conserved Domains (3) summary
    PLN02545
    Location:34 → 329
    PLN02545; 3-hydroxybutyryl-CoA dehydrogenase
    pfam00725
    Location:222 → 319
    3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
    pfam02737
    Location:39 → 220
    3HCDH_N; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Nucleotide Protein
Heading Accession and Version

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