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PYC2 precursor of carboxylase pyruvate carboxylase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195500, updated on 21-Dec-2023

Summary

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Gene symbol
PYC2
Gene description
precursor of carboxylase pyruvate carboxylase
Locus tag
PHATRDRAFT_49339
Gene type
protein coding
RNA name
precursor of carboxylase pyruvate carboxylase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 21
Exon count:
1
Sequence:
Chromosome: 21; NC_011689.1 (627913..631798)

Chromosome 21 - NC_011689.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011689.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyruvate carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyruvate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
precursor of carboxylase pyruvate carboxylase
XP_002183906.1
  • Replenishes the supply of oxaloacetate for the tricarboxylic acid cycle by catalyzing the reaction: pyruvate + ATP + HCO3- = oxaloacetate + ADP + Pi.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011689.1 Reference assembly

    Range
    627913..631798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002183870.1 → XP_002183906.1  precursor of carboxylase pyruvate carboxylase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002183906.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GA98
    Conserved Domains (7) summary
    cd06850
    Location:1197 → 1263
    biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
    cd07937
    Location:652 → 935
    DRE_TIM_PC_TC_5S; Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain
    smart00878
    Location:434 → 540
    Biotin_carb_C; Biotin carboxylase C-terminal domain
    PRK12999
    Location:92 → 1264
    PRK12999; pyruvate carboxylase; Reviewed
    pfam00289
    Location:93 → 203
    CPSase_L_chain; Carbamoyl-phosphate synthase L chain, N-terminal domain
    pfam02436
    Location:946 → 1148
    PYC_OADA; Conserved carboxylase domain
    cl17255
    Location:210 → 417
    ATP-grasp_4; ATP-grasp domain
Nucleotide Protein
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