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ACL1 precursor of ligase long chain acyl-coa ligase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7196805, updated on 21-Dec-2023

Summary

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Gene symbol
ACL1
Gene description
precursor of ligase long chain acyl-coa ligase
Locus tag
PHATRDRAFT_17720
Gene type
protein coding
RNA name
precursor of ligase long chain acyl-coa ligase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_011669.1 (1715546..1717766, complement)

Chromosome 1 - NC_011669.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene s-phase kinase-associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011669.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables long-chain fatty acid-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
precursor of ligase long chain acyl-coa ligase
XP_002177356.1
  • Catalyzes ester formation of free fatty acids and free CoA. Contains peroxisomal targeting motif, may be involved in beta-oxidation of polyunsaturated fatty acids. When the Thalassiosira pseudonana homolog of this gene was expressed in yeast, it was found to be most specific for DHA, and less specific for EPA and improved accumulation of DHA in triglyceride.; long chain acyl-CoA synthetase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011669.1 Reference assembly

    Range
    1715546..1717766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002177320.1 → XP_002177356.1  precursor of ligase long chain acyl-coa ligase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002177356.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FQ93, U5TUP0
    Conserved Domains (2) summary
    PLN02736
    Location:40 → 672
    PLN02736; long-chain acyl-CoA synthetase
    cd05927
    Location:71 → 668
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Nucleotide Protein
Heading Accession and Version

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