U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PHATRDRAFT_43785 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7197057, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
PHATRDRAFT_43785
Gene description
predicted protein
Locus tag
PHATRDRAFT_43785
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PHATRDRAFT_43785 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_011670.1 (1476032..1477798)

Chromosome 2 - NC_011670.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_011670.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
predicted protein
XP_002177841.1
  • This ion channel sequence clusters in bacterial (ERiC etc) group of chloride channels. Ortholog in T.pseudonana (Tp_96497 and Tp_4666). Predicted 10 TM domains. HP plot suggests possible '5 extension required, this is supported by EST.

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011670.1 Reference assembly

    Range
    1476032..1477798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002177805.1 → XP_002177841.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002177841.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FTG7
    Conserved Domains (2) summary
    cd00400
    Location:123 → 555
    Voltage_gated_ClC; CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This ...
    pfam00654
    Location:163 → 559
    Voltage_CLC; Voltage gated chloride channel
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases