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PHATRDRAFT_573 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7197354, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_573
Gene description
predicted protein
Locus tag
PHATRDRAFT_573
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_011670.1 (1072274..1074430, complement)

Chromosome 2 - NC_011670.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene mannosyl transferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011670.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011670.1 Reference assembly

    Range
    1072274..1074430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002178030.1 → XP_002178066.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002178066.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FSY9
    Conserved Domains (3) summary
    pfam14874
    Location:389 → 444
    PapD-like; Flagellar-associated PapD-like
    cl00490
    Location:22 → 350
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl02570
    Location:487 → 665
    RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
Nucleotide Protein
Heading Accession and Version

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