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PHATRDRAFT_18087 adenylosuccinate lyase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7197416, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_18087
Gene description
adenylosuccinate lyase
Locus tag
PHATRDRAFT_18087
Gene type
protein coding
RNA name
adenylosuccinate lyase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_011670.1 (310365..312078, complement)

Chromosome 2 - NC_011670.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011670.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' AMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
adenylosuccinate lyase
XP_002177907.1
  • adenylosuccinate lyase A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes.; Adenylosuccinase; ASL; ASASE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011670.1 Reference assembly

    Range
    310365..312078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002177871.1 → XP_002177907.1  adenylosuccinate lyase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002177907.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9S8I6, B7FS29
    Conserved Domains (2) summary
    cd03302
    Location:30 → 465
    Adenylsuccinate_lyase_2; Adenylsuccinate lyase (ASL)_subgroup 2
    COG0015
    Location:30 → 476
    PurB; Adenylosuccinate lyase [Nucleotide transport and metabolism]
Nucleotide Protein
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