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PHATRDRAFT_43288 prephenate dehydrogenase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7197593, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_43288
Gene description
prephenate dehydrogenase
Locus tag
PHATRDRAFT_43288
Gene type
protein coding
RNA name
prephenate dehydrogenase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_011670.1 (32715..34250)

Chromosome 2 - NC_011670.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene nuclear-encoded-like protein of chloroplast gro

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011670.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arogenate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tyrosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
prephenate dehydrogenase
XP_002177542.1
  • expressed protein probably contains signal ER presequence and it seems to be targeted to plastid

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011670.1 Reference assembly

    Range
    32715..34250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002177506.1 → XP_002177542.1  prephenate dehydrogenase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002177542.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7FRR8
    Conserved Domains (2) summary
    PLN02256
    Location:61 → 387
    PLN02256; arogenate dehydrogenase
    COG0287
    Location:114 → 376
    TyrA; Prephenate dehydrogenase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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