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HemD uroporphyrinogen-iii synthase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7198106, updated on 21-Dec-2023

Summary

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Gene symbol
HemD
Gene description
uroporphyrinogen-iii synthase
Locus tag
PHATRDRAFT_44610
Gene type
protein coding
RNA name
uroporphyrinogen-iii synthase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See HemD in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_011672.1 (1036862..1037854)

Chromosome 4 - NC_011672.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011672.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables uroporphyrinogen-III synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in uroporphyrinogen III biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
uroporphyrinogen-iii synthase
XP_002178352.1
  • sixth step in heme synthesis, putative signal peptide detected by SignalP, putatively chloroplast targeted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011672.1 Reference assembly

    Range
    1036862..1037854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002178316.1 → XP_002178352.1  uroporphyrinogen-iii synthase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002178352.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9TX28, B7FUN6
    Conserved Domains (1) summary
    cd06578
    Location:50 → 282
    HemD; Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in ...
Nucleotide Protein
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