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PHATRDRAFT_49601 alanine glyoxylate aminotransferase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7198211, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_49601
Gene description
alanine glyoxylate aminotransferase
Locus tag
PHATRDRAFT_49601
Gene type
protein coding
RNA name
alanine glyoxylate aminotransferase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 23
Exon count:
2
Sequence:
Chromosome: 23; NC_011691.1 (165315..167231)

Chromosome 23 - NC_011691.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011691.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alanine-glyoxylate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-pyruvate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine biosynthetic process, by transamination of glyoxylate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
alanine glyoxylate aminotransferase
XP_002184315.1
  • Hypothetical protein with putative alanine glyoxylate aminotransferase domain; however, strong alignment with putative serine-pyruvate aminotransferase, an enzyme in the photorespiratory pathway that catalyzes the conversion of serine to hydroxypyruvate; DBGET notes that these two enzymes may be identical (EC 2.6.1.44 an

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011691.1 Reference assembly

    Range
    165315..167231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002184279.1 → XP_002184315.1  alanine glyoxylate aminotransferase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002184315.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GB64
    Conserved Domains (2) summary
    COG0075
    Location:78 → 451
    PucG; Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG [Amino acid transport and metabolism, Nucleotide transport and metabolism]
    cl18945
    Location:77 → 448
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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