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PDS2 phytoene desaturase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7198353, updated on 21-Dec-2023

Summary

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Gene symbol
PDS2
Gene description
phytoene desaturase
Locus tag
PHATRDRAFT_55102
Gene type
protein coding
RNA name
phytoene desaturase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PDS2 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
2
Sequence:
Chromosome: 24; NC_011692.1 (265288..267343)

Chromosome 24 - NC_011692.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene purine permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011692.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phytoene dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
phytoene desaturase
XP_002184512.1
  • phytoene desaturase 2; expressed gene with similarities to higher plant and green algae phytoene desaturases, possibly involved in carotenoid biosynthesis, chloroplast localised; phytoene dehydrogenase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011692.1 Reference assembly

    Range
    265288..267343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002184476.1 → XP_002184512.1  phytoene desaturase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002184512.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GBV4
    Conserved Domains (3) summary
    TIGR02731
    Location:73 → 524
    phytoene_desat; phytoene desaturase
    pfam13450
    Location:76 → 142
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
    cl21454
    Location:246 → 341
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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