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PHATRDRAFT_51245 carboxylase propionyl-coa carboxylase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7198785, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_51245
Gene description
carboxylase propionyl-coa carboxylase
Locus tag
PHATRDRAFT_51245
Gene type
protein coding
RNA name
carboxylase propionyl-coa carboxylase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 26
Exon count:
3
Sequence:
Chromosome: 26; NC_011694.1 (126584..129045)

Chromosome 26 - NC_011694.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011694.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables propionyl-CoA carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
carboxylase propionyl-coa carboxylase
XP_002184830.1
  • Probable Propionyl-CoA carboxylase. A biotinyl-protein. Also carboxylates butanoyl-CoA and catalyses transcarboxylation. Catalyses as follows ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA Involved in valine, leucine and isoleucine degradation Propanoate metabolism

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011694.1 Reference assembly

    Range
    126584..129045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002184794.1 → XP_002184830.1  carboxylase propionyl-coa carboxylase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002184830.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GCL6
    Conserved Domains (5) summary
    cd06850
    Location:572 → 636
    biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
    smart00878
    Location:345 → 456
    Biotin_carb_C; Biotin carboxylase C-terminal domain
    COG4770
    Location:1 → 638
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]
    pfam00289
    Location:5 → 109
    CPSase_L_chain; Carbamoyl-phosphate synthase L chain, N-terminal domain
    cl17255
    Location:115 → 327
    ATP-grasp_4; ATP-grasp domain
Nucleotide Protein
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