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AAT_2 aspartate aminotransferase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7199093, updated on 21-Dec-2023

Summary

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Gene symbol
AAT_2
Gene description
aspartate aminotransferase
Locus tag
PHATRDRAFT_23871
Gene type
protein coding
RNA name
aspartate aminotransferase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 28
Exon count:
2
Sequence:
Chromosome: 28; NC_011696.1 (64821..66221)

Chromosome 28 - NC_011696.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011696.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
aspartate aminotransferase
XP_002185116.1
  • probable Aspartate amino transferase aminoacid metabolism

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011696.1 Reference assembly

    Range
    64821..66221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002185080.1 → XP_002185116.1  aspartate aminotransferase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002185116.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7GDE4
    Conserved Domains (2) summary
    PLN02397
    Location:8 → 426
    PLN02397; aspartate transaminase
    pfam00155
    Location:55 → 421
    Aminotran_1_2; Aminotransferase class I and II
Nucleotide Protein
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