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PHATRDRAFT_16963 glutaminyl-trna synthetase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7199323, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_16963
Gene description
glutaminyl-trna synthetase
Locus tag
PHATRDRAFT_16963
Gene type
protein coding
RNA name
glutaminyl-trna synthetase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PHATRDRAFT_16963 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
1
Sequence:
Chromosome: 30; NC_011698.1 (184774..186477)

Chromosome 30 - NC_011698.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011698.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutaminyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
glutaminyl-trna synthetase
XP_002185394.1
  • The aminoacyl-tRNA synthetases catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA.; Glutamine--tRNA ligase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011698.1 Reference assembly

    Range
    184774..186477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002185358.1 → XP_002185394.1  glutaminyl-trna synthetase, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002185394.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9X464, B7GE88
    Conserved Domains (3) summary
    PRK05347
    Location:1 → 568
    PRK05347; glutaminyl-tRNA synthetase; Provisional
    pfam03950
    Location:328 → 546
    tRNA-synt_1c_C; tRNA synthetases class I (E and Q), anti-codon binding domain
    cl00015
    Location:1 → 329
    nt_trans; nucleotidyl transferase superfamily
Nucleotide Protein
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