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PTD15 precursor of desaturase omega-3 desaturase [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7199404, updated on 21-Dec-2023

Summary

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Gene symbol
PTD15
Gene description
precursor of desaturase omega-3 desaturase
Locus tag
PHATRDRAFT_41570
Gene type
protein coding
RNA name
precursor of desaturase omega-3 desaturase
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 31
Exon count:
1
Sequence:
Chromosome: 31; NC_011699.1 (191712..193019)

Chromosome 31 - NC_011699.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011699.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
precursor of desaturase omega-3 desaturase
XP_002185498.1
  • membrane bound, di-iron oxidoreductase, containing three 'histidine box' motifs. Similar to omega-3 desaturases. Probably involved in the biosynthesis of eicosapentaenoic and docasahexaenoic acids.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011699.1 Reference assembly

    Range
    191712..193019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002185462.1 → XP_002185498.1  precursor of desaturase omega-3 desaturase [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002185498.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9T9M3, B7GEK2
    Conserved Domains (2) summary
    pfam00487
    Location:140 → 402
    FA_desaturase; Fatty acid desaturase
    cl00615
    Location:100 → 384
    Membrane-FADS-like; The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the ...
Nucleotide Protein
Heading Accession and Version

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